Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ebA1664 | rpoN1 | ebA1664 | ebA3393 | Probable sigma-N-dependent transcriptional regulator. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.798 |
| ebA1664 | rpoN2 | ebA1664 | ebA6931 | Probable sigma-N-dependent transcriptional regulator. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.800 |
| ebA324 | rpoN1 | ebA324 | ebA3393 | Putative sigma-54 dependent transcriptional regulator. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.795 |
| ebA324 | rpoN2 | ebA324 | ebA6931 | Putative sigma-54 dependent transcriptional regulator. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.797 |
| ebA4627 | rpoN1 | ebA4627 | ebA3393 | Probable transcription regulator protein. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.801 |
| ebA4627 | rpoN2 | ebA4627 | ebA6931 | Probable transcription regulator protein. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.802 |
| ebA966 | rpoN1 | ebA966 | ebA3393 | Probable two-component transcriptional regulator. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.951 |
| ebA966 | rpoN2 | ebA966 | ebA6931 | Probable two-component transcriptional regulator. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.950 |
| ebA966 | yfhK | ebA966 | ebA960 | Probable two-component transcriptional regulator. | Sensory transduction histidine kinase. | 0.993 |
| ebB108 | rpoN1 | ebB108 | ebA3393 | Sigma 54 modulation protein / S30EA ribosomal protein. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.845 |
| ebB108 | rpoN2 | ebB108 | ebA6931 | Sigma 54 modulation protein / S30EA ribosomal protein. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.413 |
| pilR | pilS | ebA3894 | ebA3892 | Response regulator PilR. | Sensor kinase PilS. | 0.990 |
| pilR | rpoN1 | ebA3894 | ebA3393 | Response regulator PilR. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.953 |
| pilR | rpoN2 | ebA3894 | ebA6931 | Response regulator PilR. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.953 |
| pilS | pilR | ebA3892 | ebA3894 | Sensor kinase PilS. | Response regulator PilR. | 0.990 |
| pilS | rpoN1 | ebA3892 | ebA3393 | Sensor kinase PilS. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.906 |
| pilS | rpoN2 | ebA3892 | ebA6931 | Sensor kinase PilS. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.906 |
| poxR | rpoN1 | ebA5755 | ebA3393 | Positive regulator of phenol-degradative genes. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.806 |
| poxR | rpoN2 | ebA5755 | ebA6931 | Positive regulator of phenol-degradative genes. | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.808 |
| rpoN1 | ebA1664 | ebA3393 | ebA1664 | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Probable sigma-N-dependent transcriptional regulator. | 0.798 |
page 1 of 3