STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA3446Putative multidrug resistance protein. (433 aa)    
Predicted Functional Partners:
emrB
Probable multidrug resistance B (Translocase) transmembrane protein; Belongs to the major facilitator superfamily.
 
 
 0.986
ebA3445
Putative outer membrane protein.
 
 
 0.968
marR
Transcriptional regulator (MarR family).
 
  
 0.831
tolC-2
Outer membrane channel protein.
 
 
 0.815
opmR
Outer membrane protein oprM precursor.
 
 
 0.815
ebA1847
Probable outer membrane protein.
 
 
 0.794
macB
Transmembrane ATP-binding ABC transporter protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.704
ebA1783
Outer membrane protein, ortholog involved in agglutination in some bacteria.
  
 
 0.656
ebA2169
Outer membrane efflux protein.
  
 
 0.656
tolC
Type I secretion outer membrane efflux protein.
  
 
 0.611
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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