STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA3554Hypothetical protein. (84 aa)    
Predicted Functional Partners:
paaR
Probable transcriptional regulator of paa operon.
       0.773
ebA3556
Putative amino-acid-binding periplasmic (PBP) ABC transporter protein.
       0.705
paaE
Probable ring-hydroxylation complex protein 4.
       0.625
paaD
Putative ring oxidation complex protein 3.
       0.547
paaC
Putativ ring-hydroxylation complex protein 2.
       0.514
paaB
PaaB protein; Related to aerobic phenylacetate degradation.
       0.495
ebA3558
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.455
ebA3559
Putative branched-chain amino acid transport system protein; Belongs to the binding-protein-dependent transport system permease family.
       0.455
ebA3560
Amino-acid composite ATP-binding transmembrane ABC transporter protein.
       0.455
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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