Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
paaRProbable transcriptional regulator of paa operon. (205 aa)    
Predicted Functional Partners:
ebA3554
Hypothetical protein.
       0.773
ebA3556
Putative amino-acid-binding periplasmic (PBP) ABC transporter protein.
 
     0.757
paaE
Probable ring-hydroxylation complex protein 4.
 
  
 0.755
paaD
Putative ring oxidation complex protein 3.
 
   
 0.718
paaC
Putativ ring-hydroxylation complex protein 2.
 
   
 0.710
paaB
PaaB protein; Related to aerobic phenylacetate degradation.
 
   
 0.664
ebA715
TetR-family transcriptional regulator.
  
     0.624
ebA2046
Probable TetR-family transcriptional regulator.
  
     0.622
paaA
Putativ ring-oxidation complex protein 1.
 
   
 0.601
ebA3297
Putative aromatic monooxygenase.
  
   
 0.571
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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