Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
flpPilus assembly protein, pilin component. (66 aa)    
Predicted Functional Partners:
ebD22
INTERPRO: probable Flp/Fap pilin component.
    
 
0.949
flp-2
Pilus assembly protein, pilin component.
    
  0.937
cpaB
Pilus assembly transmembrane protein.
  
  
 0.777
ebA3707
Flp pilus assembly protein, ATPase.
  
  
 0.720
ebA3718
Hypothetical protein, Flp pilus assembly protein, protease.
  
  
 0.639
cpaC
Probable outer membrane channel protein,probably involved in pilus assembly; Belongs to the bacterial secretin family.
  
  
 0.580
ebA3722
Hypothetical protein.
       0.578
ebA3703
Putative Flp pilus assembly protein.
  
  
 0.496
ebA3709
Hypothetical protein.
  
  
 0.463
ebA3710
Hypothetical protein, similarity to Flp pilus assembly protein TadG.
  
  
 0.463
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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