STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilRResponse regulator PilR. (456 aa)    
Predicted Functional Partners:
pilS
Sensor kinase PilS.
 
 0.990
rpoN1
RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.953
rpoN2
RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.953
ebA2146
Probable regulator protein containing CheR-and CheB-like domains.
  
 
 0.754
ebD129
Fragment of conserved hypothetical protein.
       0.684
pilL
Pili chemotaxis protein similar PilL.
 
 
 0.643
ebA6051
Putative sensory transduction histidine kinase of highly complex domain structure.
  
 
0.636
ebA3896
Hypothetical protein.
       0.543
ebA3890
Probable pyridoxal phosphate aminotransferase protein.
       0.514
flhA
Flagellar biosynthesis protein flha.
  
  
 0.498
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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