STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA3984Carbamoyltransferase, NodU family. (585 aa)    
Predicted Functional Partners:
ebA3993
Conserved hypothetical protein,predicted protein kinase family.
 
     0.786
ebA3985
Glycosyl transferase.
       0.780
waaP
Lipopolysaccharide core biosynthesis protein WaaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
     0.776
waaG
UDP-glucose:(heptosyl) LPS alpha 1,3-glucosyltransferase.
 
     0.766
ebA3987
Hypothetical protein.
       0.697
ebA598
Conserved hypothetical protein,predicted sulfatase family.
  
     0.644
waaC
Heptosyltransferase I.
 
  
 0.617
ebA3990
Predicted O-Antigen Polymerase.
 
   
 0.539
ebB83
Conserved hypothetical protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
     0.504
ebA3983
Putative sodium/alanine symporter family protein.
       0.480
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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