STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA4032Transcription regulator protein, lysR family; Belongs to the LysR transcriptional regulatory family. (288 aa)    
Predicted Functional Partners:
ebA4033
Conserved hypothetical protein.
       0.753
reg3
Regulatory protein, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.613
ebA5056
Putative transcriptional regulator,lysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.491
gls1
Ferredoxin-dependent glutamate synthase.
     
 0.457
lysR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.445
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.420
cysG
uroporphyrinogen-III methylase, c-terminal half; Belongs to the precorrin methyltransferase family.
     
 0.416
ebA4029
Nitroreductase family protein.
     
 0.415
ebA4019
Probable transmembrane ABC transporter protein, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.408
ebA4026
Hypothetical protein.
       0.403
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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