STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA4131Probable short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (236 aa)    
Predicted Functional Partners:
bbsC
Subunit of 2-[hydroxy(phenyl)methyl]-succinyl-CoA DH.
  
 
   0.800
ebA4458
Probable short chain dehydrogenase.
 
  
 0.547
ebA4129
Conserved hypothetical protein.
       0.541
ebA142
Hypothetical protein.
 
  
 0.515
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
 
 
 0.488
ascD
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehyd rase reductase.
  
 0.416
ebA5423
Conserved hypothetical protein with ankyrin-repeat.
  
 0.413
fabD
Probable malonyl CoA-[acyl-carrier-protein] transacylase.
  
 
 0.405
ebA5186
ABC efflux transporter, permease/ATP-binding protein.
 
 
 0.400
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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