STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspE2Bacterial type II secretion system protein E. (785 aa)    
Predicted Functional Partners:
pulF
Bacterial type II secretion system protein.
 
 
 0.902
gspF
General secretion pathway protein F.
 
 
 0.901
pilC
Type IV fimbrial biogenesis protein,PilC.
 
 
 0.901
gspF2
General secretion pathway protein F.
 
 
 0.901
pilD
Type IV fimbrial biogenesis protein,prepilin cysteine protease (C20) PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.838
gspL
General secretion pathway protein L.
  
 
 0.705
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
   0.667
ebB36
Probable secretion protein.
 
 
 0.616
ebA4167
cAMP phosphodiesterases class-II:metallo-beta-lactamase superfamily.
 
     0.614
rec2
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.600
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.