STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompC-2Outer membrane protein (porin). (359 aa)    
Predicted Functional Partners:
ebA1863
Hypothetical protein.
  
  
 0.684
nlpB
Predicted uncharacterized lipoprotein.
  
   
 0.679
ebA3974
Putative transmembrane protein.
  
     0.642
ebA3180
Hypothetical protein.
  
     0.571
ebA4243
Hypothetical protein.
       0.568
ebA5644
Outer membrane porin protein, similar to precursor (OMP32).
  
  
 
0.564
ompC
Outer membrane protein (porin), similar to outer membrane porin protein 32 precursor (OMP32).
  
  
 
0.561
ebA2143
Putative porin precursor transmembrane protein.
  
  
 
0.556
rpoH
Sigma-32 factor RpoH (RNA polymerase sigma factor); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
 
 0.554
ompC-3
Outer membrane protein (porin).
  
  
 
0.548
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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