Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ompC-2Outer membrane protein (porin). (359 aa)    
Predicted Functional Partners:
nlpB
Predicted uncharacterized lipoprotein.
  
   
 0.692
ebA3974
Putative transmembrane protein.
  
     0.642
btuE
Putative glutathione peroxidase protein; Belongs to the glutathione peroxidase family.
      
 0.604
ebA3180
Hypothetical protein.
  
   
 0.583
ebA4243
Hypothetical protein.
       0.568
rpoH
Sigma-32 factor RpoH (RNA polymerase sigma factor); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
 
 0.547
ebA1522
Conserved hypothetical protein.
  
     0.533
rlpB
Putative lipoprotein B precursor; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
   
 0.529
ebA4352
Similar to transmembrane protein.
  
     0.515
ebB122
Conserved hypothetical protein.
  
     0.508
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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