STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA4259Conserved hypothetical protein. (345 aa)    
Predicted Functional Partners:
ebA4258
Polysaccharide deacetylase.
 
   
 0.954
ebA4261
Conserved hypothetical protein.
 
     0.952
ebA4262
Glycosyl transferase group 1.
 
     0.945
ebA4266
Glycosyl transferases group 1.
 
     0.940
ebA4264
Glycosyl transferase, group 1.
 
     0.938
ebA4249
Polysaccharide chain length determinant protein.
 
     0.901
asnB
Amidotransferase class-II, similar to asparagine synthase (glutamine-hydrolyzing).
 
     0.901
ebA4250
Probable exopolysaccharide biosynthesis protein.
 
     0.893
ebA4256
General secretion pathway protein-related protein.
 
     0.893
ebA4277
Conserved hypothetical membrane protein; potential lipid A core-O-antigen ligase.
 
     0.876
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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