STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA4298Conserved hypothetical protein. (389 aa)    
Predicted Functional Partners:
fadD
AMP-generating CoA ligase.
 
     0.607
lysA-2
Ornithine/diaminopimelate/arginine decarboxylase, family 2.
       0.469
ebA4303
Conserved hypothetical protein; possible esterase/lipase/thioesterase.
  
    0.427
ebA4300
Hypothetical protein; possible esterase/lipase/thioesterase.
  
    0.423
ebA4278
Hypothetical protein.
  
     0.420
ebA4304
Glycosyl transferase, family 2.
       0.420
revt3
Reverse transcriptase/retron type,probably fragment.
 
     0.412
ebA4295
Putative exopolysaccharide export protein, possibly related with succinoglycan synthesis.
       0.410
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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