STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA4300Hypothetical protein; possible esterase/lipase/thioesterase. (303 aa)    
Predicted Functional Partners:
ebA4303
Conserved hypothetical protein; possible esterase/lipase/thioesterase.
     0.973
fdhB
Formate dehydrogenase, NAD(P) reducing, beta subunit.
  
 
 0.945
ebA4304
Glycosyl transferase, family 2.
 
   0.934
fadD
AMP-generating CoA ligase.
 
   
 0.830
lysA-2
Ornithine/diaminopimelate/arginine decarboxylase, family 2.
 
     0.811
ebA4319
Conserved hypothetical protein.
  
     0.766
ebA4277
Conserved hypothetical membrane protein; potential lipid A core-O-antigen ligase.
 
     0.764
ebA4259
Conserved hypothetical protein.
  
     0.763
nuoD
NADH dehydrogenase I, chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 
 0.763
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
  
 
 0.763
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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