STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpF13Putative transposase (IS4, fragment). (491 aa)    
Predicted Functional Partners:
tnpF14
Putative transposase (IS4, fragment).
 
     0.942
tnpF-2
Transposase, fragment.
  
     0.774
revt3
Reverse transcriptase/retron type,probably fragment.
       0.773
ebA4310
Hypothetical protein.
       0.527
ebA4300
Hypothetical protein; possible esterase/lipase/thioesterase.
       0.488
ebA4303
Conserved hypothetical protein; possible esterase/lipase/thioesterase.
       0.488
ebA4304
Glycosyl transferase, family 2.
       0.488
exoW
Putative glycosyltransferase, possibly involved in succinoglycan biosynthesis protein.
       0.480
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.