STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA4326Putative acyl-CoA synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. (522 aa)    
Predicted Functional Partners:
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
 
0.963
ebB145
Predicted acyl carrier protein.
  
 
 0.843
ebA4327
Acyl-CoA dehydrogenase.
  
  
 0.793
fabF
Beta-ketoacyl-(acyl-carrier-protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.764
ebA6908
Conserved hypothetical protein,predicted short-chain dehydrogenase/reductase SDR family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.764
ebA4323
Hypothetical protein.
  
    0.709
fdhB
Formate dehydrogenase, NAD(P) reducing, beta subunit.
    
 
 0.691
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.663
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
  
 0.638
ebA738
Putative alcohol dehydrogenase related to anaerobic 3-hydroxybenzoate metabolism; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.606
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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