STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ebA4326Putative acyl-CoA synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. (522 aa)    
Predicted Functional Partners:
ebA4327
Acyl-CoA dehydrogenase.
  
 
 0.977
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
0.965
ebB145
Predicted acyl carrier protein.
  
 
 0.854
ebA6908
Conserved hypothetical protein,predicted short-chain dehydrogenase/reductase SDR family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.766
fabF
Beta-ketoacyl-(acyl-carrier-protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.765
ebA4323
Hypothetical protein.
       0.708
fdhB
Formate dehydrogenase, NAD(P) reducing, beta subunit.
    
 
 0.674
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
  
 0.635
ebA738
Putative alcohol dehydrogenase related to anaerobic 3-hydroxybenzoate metabolism; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.596
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
   0.581
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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