STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilBType IV fimbrial biogenesis protein,PilB. (571 aa)    
Predicted Functional Partners:
pilC
Type IV fimbrial biogenesis protein,PilC.
 
 
 0.976
pilD
Type IV fimbrial biogenesis protein,prepilin cysteine protease (C20) PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.940
gspF
General secretion pathway protein F.
 
 
 0.913
gspF2
General secretion pathway protein F.
 
 
 0.913
pulF
Bacterial type II secretion system protein.
 
 
 0.910
gspL
General secretion pathway protein L.
  
 
 0.733
pilZ
Type IV fimbrial biogenesis protein PilZ.
  
 
 
 0.652
pilN
Type IV fimbrial biogenesis protein PilN.
 
 
 0.645
pilM
Type IV fimbrial biogenesis protein PilM.
 
 
 
 0.642
pilQ
Fimbrial type-IV assembly protein PilQ.
 
 
 
 0.624
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.