STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilBType IV fimbrial biogenesis protein,PilB. (571 aa)    
Predicted Functional Partners:
pilC
Type IV fimbrial biogenesis protein,PilC.
 
 
 0.974
pilD
Type IV fimbrial biogenesis protein,prepilin cysteine protease (C20) PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.945
gspF
General secretion pathway protein F.
 
 
 0.905
gspF2
General secretion pathway protein F.
 
 
 0.905
pulF
Bacterial type II secretion system protein.
 
 
 0.901
gspL
General secretion pathway protein L.
  
 
 0.705
pilN
Type IV fimbrial biogenesis protein PilN.
 
 
 0.635
pilZ
Type IV fimbrial biogenesis protein PilZ.
  
 
 
 0.630
pilM
Type IV fimbrial biogenesis protein PilM.
 
 
 0.623
rec2
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.600
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.