STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA4507Similar to glycerol-3-phosphate-binding periplasmic protein. (421 aa)    
Predicted Functional Partners:
ugpQ
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.914
ispB
Polyprenyl synthetase (EC 2.5.1.-), gene: ISPB OR NE1915; Belongs to the FPP/GGPP synthase family.
       0.575
rocD
Probable bifunctional arginase/ornithine aminotransferase; Belongs to the arginase family.
  
  
 0.456
ebA833
Predicted glycosyl transferase.
  
  
 0.451
ebA4612
Conserved hypothetical protein.
 
     0.445
rlmM
Predicted SAM-dependent methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.444
ebA6051
Putative sensory transduction histidine kinase of highly complex domain structure.
     
 0.431
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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