STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nnrRNnr-like transcriptional regulator, Crp family. (227 aa)    
Predicted Functional Partners:
crp
Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein).
  
     0.687
dnrE
Transcriptional regulator, Dnr-type.
  
     0.632
dnrD1
Transcriptional regulator, Dnr type.
  
     0.617
dnr
Transcriptional regulator, Dnr/Nnr type.
  
     0.600
sdhB
Succinate dehydrogenase (Iron-sulfur subunit) oxidoreductase protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
  
 0.556
fnr
Transcription factor Fnr.
  
     0.542
rpoB
DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.541
ebA6051
Putative sensory transduction histidine kinase of highly complex domain structure.
  
 
 0.523
rpoA
DNA-directed RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.512
sdhC
Putative succinate dehydrogenase cytochrome B subunit (Succinate dehydrogenase, cytochrome b556 subunit.
  
  
 0.491
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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