Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA4712Probable regulatory protein, LysR. (527 aa)    
Predicted Functional Partners:
ebA4715
Hypothetical protein.
 
     0.939
ebA4709
Predicted exporters of the RND superfamily.
 
     0.898
ebA4705
Hypothetical protein.
 
     0.890
ebA2217
Hypothetical protein.
  
     0.752
qhpB
Quinohemoprotein amine dehydrogenase, subunit beta.
  
     0.749
ebA4590
Conserved hypothetical protein,predicted membrane-bound metal-dependent hydrolase.
  
     0.738
qhpB-2
Quinohemoprotein amine dehydrogenase 40 kDa subunit.
  
     0.732
c1A68
Hypothetical protein.
 
     0.725
ebA3686
Hypothetical protein.
  
     0.708
ebA3023
Conserved hypothetical protein.
  
     0.698
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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