STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbRPredicted Polyhydroxyalkanoate synthesis repressor PhaR. (210 aa)    
Predicted Functional Partners:
phbC-2
Poly-beta-hydroxybutyrate polymerase.
 
   
 0.824
phbC-5
Poly-beta-hydroxybutyrate synthase.
 
   
 0.761
phbC-4
Putative poly-beta-hydroxyalkanoate synthase.
 
   
 0.737
phbC-6
PHA synthase subunit PhaC.
 
   
 0.725
phbC
Putative poly-beta-hydroxybutyrate synthase.
 
   
 0.719
ebA1323
Conserved hypothetical protein,predicted phasin family.
 
   
 0.683
phbP
Related to granule-associated proteins (phasins).
 
   
 0.673
adh-2
Short-chain dehydrogenase/reductase,possibly involved in polyhydroxybutyrate (PHB) synthesis; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.657
rimO
Radical SAM protein similar to MiaB; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.648
phbB
Acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.646
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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