Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aroE | ebA4819 | ebA1735 | ebA4819 | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | 0.616 |
| aroE | nadD | ebA1735 | ebA3972 | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Putative cytidylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.768 |
| aroE | rsfS | ebA1735 | ebA3971 | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Conserved hypothetical protein,predicted iojap-related protein family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.467 |
| ebA1030 | ebA4819 | ebA1030 | ebA4819 | Conserved hypothetical protein; Belongs to the UPF0307 family. | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | 0.470 |
| ebA1030 | rsfS | ebA1030 | ebA3971 | Conserved hypothetical protein; Belongs to the UPF0307 family. | Conserved hypothetical protein,predicted iojap-related protein family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.590 |
| ebA4819 | aroE | ebA4819 | ebA1735 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.616 |
| ebA4819 | ebA1030 | ebA4819 | ebA1030 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Conserved hypothetical protein; Belongs to the UPF0307 family. | 0.470 |
| ebA4819 | ebA6051 | ebA4819 | ebA6051 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Putative sensory transduction histidine kinase of highly complex domain structure. | 0.415 |
| ebA4819 | ftsJ | ebA4819 | ebA4820 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Cell division protein FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.632 |
| ebA4819 | infA | ebA4819 | ebA1871 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.439 |
| ebA4819 | infA1 | ebA4819 | ebD115 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.439 |
| ebA4819 | nadD | ebA4819 | ebA3972 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Putative cytidylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.782 |
| ebA4819 | rimP | ebA4819 | ebA5838 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.409 |
| ebA4819 | rsfS | ebA4819 | ebA3971 | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | Conserved hypothetical protein,predicted iojap-related protein family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.581 |
| ebA6051 | ebA4819 | ebA6051 | ebA4819 | Putative sensory transduction histidine kinase of highly complex domain structure. | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | 0.415 |
| ebA6051 | infA | ebA6051 | ebA1871 | Putative sensory transduction histidine kinase of highly complex domain structure. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.435 |
| ebA6051 | infA1 | ebA6051 | ebD115 | Putative sensory transduction histidine kinase of highly complex domain structure. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.435 |
| ftsJ | ebA4819 | ebA4820 | ebA4819 | Cell division protein FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | 0.632 |
| ftsJ | rsfS | ebA4820 | ebA3971 | Cell division protein FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | Conserved hypothetical protein,predicted iojap-related protein family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.544 |
| infA | ebA4819 | ebA1871 | ebA4819 | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Predicted RNA-binding protein containing KH domain, possibly ribosomal protein. | 0.439 |
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