STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA5018Transcriptional regulatory protein,lysR family. (306 aa)    
Predicted Functional Partners:
reg3
Regulatory protein, LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.625
ebA5020
Predicted nucleoside-diphosphate-sugar epimerases.
       0.543
cybB
Probable cytochrome b561.
       0.478
ebA5022
Similar to YceI, base-induced periplasmic protein; Belongs to the UPF0312 family.
       0.462
ebA5028
Conserved hypothetical protein; Belongs to the UPF0312 family.
 
     0.461
gls1
Ferredoxin-dependent glutamate synthase.
     
 0.457
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.457
lysR-4
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.400
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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