STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
exbB2MotA/TolQ/ExbB proton channel family protein. (202 aa)    
Predicted Functional Partners:
exbD2
Biopolymer transport protein ExbD/TolR.
 
 
 0.990
ebA1737
Putative TonB protein.
 
 
 0.926
tolR
Biopolymer transport protein ExbD/TolR.
 
 
 0.855
exbD1
Biopolymer transport protein ExbD/TolR.
 
 
 0.847
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.774
ebA1839
Hypothetical protein, possibly TonB-like energy transducer.
  
 
 0.739
tonB
Predicted gram-negative bacterial tonB protein.
  
 
 0.739
ebA3394
Putative ATP-binding ABC transporter protein.
 
   
 0.633
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38); Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
 
   
 0.629
ebA5079
Hypothetical protein.
       0.539
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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