Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA5111Hypothetical protein. (239 aa)    
Predicted Functional Partners:
pilV
Similar to type IV pilin protein pilV.
 
  
 0.986
ebA5109
Hypothetical protein.
 
  
 0.985
pilE
Pilus assembly protein.
 
  
 0.944
fimU
Fimbrial protein pilin similar to FimU.
 
  
 0.936
fimT
Type 4 fimbrial pilin related transmembrane protein similar to FimT protein.
 
  
 0.832
pilE1
Class II pilin protein PilE; Belongs to the N-Me-Phe pilin family.
  
  
 0.704
tnp39
Transposase.
       0.570
pilP
Type IV fimbrial biogenesis protein PilP.
  
  
 0.523
gspH
General secretion protein H.
  
  
 0.468
pilN
Type IV fimbrial biogenesis protein PilN.
 
  
 0.430
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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