Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA5167Conserved hypothetical protein. (590 aa)    
Predicted Functional Partners:
ebA5166
Conserved hypothetical protein.
 
    0.959
ebA5171
BNR/Asp-box repeat protein.
 
    0.918
ebA5169
Transport protein.
 
    0.907
ebA1932
Conserved hypothetical protein.
 
    0.874
ebA332
Conserved hypothetical protein.
 
    0.874
ebA5766
Conserved hypothetical protein.
 
    0.874
ebA5764
Conserved hypothetical protein, BNR domain protein.
 
    0.810
ebA1929
Conserved hypothetical protein.
 
    0.809
ebA329
Conserved hypothetical protein.
 
    0.809
ebA1928
Probable transporter.
 
    0.779
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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