STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA5186ABC efflux transporter, permease/ATP-binding protein. (572 aa)    
Predicted Functional Partners:
qhpB-2
Quinohemoprotein amine dehydrogenase 40 kDa subunit.
 
     0.901
ebA5188
Hypothetical protein.
 
     0.888
qhpC
Quinohemoprotein amine dehydrogenase gamma subunit.
 
     0.879
ebA5187
Hypothetical protein.
 
 
 0.879
qhpA-2
Quinohemoprotein amine dehydrogenase 60 kDa subunit.
 
    0.808
qhpX-2
Quinohemoprotein amine dehydrogenase,putative SAM-radical dependent activating subunit.
 
     0.728
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
  
 
 0.686
ebA1666
Probable fusion of ABC transporter-type transmembrane and ATP binding protein.
  
 
 0.647
ebA5191
Conserved hypothetical protein,predicted Peptidase U32 family.
 
     0.624
ftsH
Cell division protein ftsH homolog; Belongs to the AAA ATPase family.
 
   
 0.594
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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