STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fxdFerredoxin. (94 aa)    
Predicted Functional Partners:
korA2
2-oxoglutarate ferredoxin oxidoreductase alpha subunit.
  
 
 0.927
korA
2-ketoglutarate: NADP oxidoreductase,alpha subunit.
  
 
 0.927
icd2
Isocitrate dehydrogenase isozyme 2,monomeric type, NADP-specific; Belongs to the monomeric-type IDH family.
  
  
 0.782
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.780
ebB187
Conserved hypothetical protein.
       0.760
bzdV
Uncharacterized protein; Subunit of oxidoreductase of unknown function, conserved in Azoarcus-type benzoate degradation gene clusters.
  
 
 0.674
coaD
Coenzyme A biosynthesis protein: phosphopantetheine adenylylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
   
  
 0.619
ORF3
Putative regulatory protein,conserved in anaerobic benzoate degadation gene clusters.
     
 0.592
padI
Phenylglyoxylate:acceptor oxidoreductase.
  
 
 0.579
korC
2-ketoglutarate: NADP oxidoreductase gamma subunit.
  
 
 0.560
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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