STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA5317Long-chain-fatty-acid-CoA ligase (EC 6.2.1.3). (624 aa)    
Predicted Functional Partners:
ebA5318
Putative enoyl-coa hydratase/isomerase.
 
 
 0.867
ebA5316
Putative ABC transporter,periplasmic binding protein.
 
     0.824
ebA5319
Putative beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.733
boxC
Benzoyl-CoA-dihydrodiol lyase; Enoyl-CoA-hydratase/isomerase involved in isomerisation and hydrolytic ring opening of 2,3-dihydro-2,3-diol intermediate of benzoyl-CoA.
 
   0.728
boxB
Benzoyl-CoA oxygenase component B.
  
     0.718
ebA5320
Putative 3-hydroxyacyl-CoA dehydrogenase precursor; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.692
fdhB
Formate dehydrogenase, NAD(P) reducing, beta subunit.
    
 
 0.674
marR-4
Bacterial regulatory protein, MarR.
  
   
 0.643
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
  
 0.642
nagI
Gentisate 1,2-dioxygenase.
  
     0.601
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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