STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA5333Putative TonB-dependent receptor. (700 aa)    
Predicted Functional Partners:
ebA5334
Hypothetical protein.
       0.686
ebA1866
High-affinity iron permease.
   
  
 0.639
ebA3937
TonB-dependent receptor.
 
  
0.496
hemR
Hemin receptor precursor, TonB-dependent outer membrane uptake protein.
 
  
 0.475
ebA2073
L-sorbosone dehydrogenase.
  
     0.474
gumB
Polysaccharide export protein.
  
   
 0.463
ebA3193
Putative Oxidoreductase, FAD-binding.
  
  
 0.457
ebA1847
Probable outer membrane protein.
  
 
 0.435
ebA7184
Hypothetical protein.
   
  
 0.428
ebA3445
Putative outer membrane protein.
  
 
 0.422
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.