STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompC-3Outer membrane protein (porin). (349 aa)    
Predicted Functional Partners:
nlpB
Predicted uncharacterized lipoprotein.
  
   
 0.689
ebA3974
Putative transmembrane protein.
  
     0.656
ebA1863
Hypothetical protein.
  
  
 0.648
ebA3180
Hypothetical protein.
  
     0.602
ebA5644
Outer membrane porin protein, similar to precursor (OMP32).
  
  
 
0.565
ebA2143
Putative porin precursor transmembrane protein.
  
  
 
0.563
ompC
Outer membrane protein (porin), similar to outer membrane porin protein 32 precursor (OMP32).
  
  
 
0.562
ompC-2
Outer membrane protein (porin).
  
  
 
0.548
vacJ
Probable lipoprotein precursor (VACJ).
   
 
 0.528
vacJ-2
Putative lipoprotein precursor (VACJ).
   
 
 0.528
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.