Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ompC-3Outer membrane protein (porin). (349 aa)    
Predicted Functional Partners:
nlpB
Predicted uncharacterized lipoprotein.
  
   
 0.702
ebA3974
Putative transmembrane protein.
  
     0.656
ebA3180
Hypothetical protein.
  
   
 0.613
btuE
Putative glutathione peroxidase protein; Belongs to the glutathione peroxidase family.
      
 0.604
rlpB
Putative lipoprotein B precursor; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
   
 0.539
ebA3176
Hypothetical protein.
  
   
 0.532
ebA7156
Conserved hypothetical protein.
  
     0.507
vacJ
Probable lipoprotein precursor (VACJ).
   
 
 0.501
vacJ-2
Putative lipoprotein precursor (VACJ).
   
 
 0.501
ebA4352
Similar to transmembrane protein.
  
     0.481
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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