hbcL1 protein (Aromatoleum aromaticum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hbcL1

4-hydroxybenzoate CoA ligase. (493 aa)

Predicted Functional Partners:

dctM-2

0.655

ebB188

0.655

ebA5371

0.596

ebA5375

0.596

boxC

0.522

ORF3

0.487

boxB

0.481

dctP-2

0.444

ebB115

0.436

ebA5361

0.433

Your Current Organism:

Aromatoleum aromaticum

NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORF3	hbcL1	ebA5292	ebA5368	Putative regulatory protein,conserved in anaerobic benzoate degadation gene clusters.	4-hydroxybenzoate CoA ligase.	0.487
boxB	boxC	ebA2765	ebA2763	Benzoyl-CoA oxygenase component B.	Benzoyl-CoA-dihydrodiol lyase; Enoyl-CoA-hydratase/isomerase involved in isomerisation and hydrolytic ring opening of 2,3-dihydro-2,3-diol intermediate of benzoyl-CoA.	0.995
boxB	hbcL1	ebA2765	ebA5368	Benzoyl-CoA oxygenase component B.	4-hydroxybenzoate CoA ligase.	0.481
boxC	boxB	ebA2763	ebA2765	Benzoyl-CoA-dihydrodiol lyase; Enoyl-CoA-hydratase/isomerase involved in isomerisation and hydrolytic ring opening of 2,3-dihydro-2,3-diol intermediate of benzoyl-CoA.	Benzoyl-CoA oxygenase component B.	0.995
boxC	hbcL1	ebA2763	ebA5368	Benzoyl-CoA-dihydrodiol lyase; Enoyl-CoA-hydratase/isomerase involved in isomerisation and hydrolytic ring opening of 2,3-dihydro-2,3-diol intermediate of benzoyl-CoA.	4-hydroxybenzoate CoA ligase.	0.522
dctM-2	dctP-2	ebA5367	ebA5362	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	Predicted TRAP dicarboxylate transporter, DctP subunit.	0.941
dctM-2	ebA5361	ebA5367	ebA5361	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	Hypothetical protein.	0.501
dctM-2	ebA5371	ebA5367	ebA5371	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	Hybrid sensor component of two-component regulation system.	0.510
dctM-2	ebA5375	ebA5367	ebA5375	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	Sigma-54 dependent DNA-binding response regulator.	0.510
dctM-2	ebB188	ebA5367	ebB188	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	Conserved hypothetical protein.	0.972
dctM-2	hbcL1	ebA5367	ebA5368	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	4-hydroxybenzoate CoA ligase.	0.655
dctP-2	dctM-2	ebA5362	ebA5367	Predicted TRAP dicarboxylate transporter, DctP subunit.	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	0.941
dctP-2	ebA5361	ebA5362	ebA5361	Predicted TRAP dicarboxylate transporter, DctP subunit.	Hypothetical protein.	0.773
dctP-2	ebB188	ebA5362	ebB188	Predicted TRAP dicarboxylate transporter, DctP subunit.	Conserved hypothetical protein.	0.934
dctP-2	hbcL1	ebA5362	ebA5368	Predicted TRAP dicarboxylate transporter, DctP subunit.	4-hydroxybenzoate CoA ligase.	0.444
ebA5361	dctM-2	ebA5361	ebA5367	Hypothetical protein.	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	0.501
ebA5361	dctP-2	ebA5361	ebA5362	Hypothetical protein.	Predicted TRAP dicarboxylate transporter, DctP subunit.	0.773
ebA5361	ebB188	ebA5361	ebB188	Hypothetical protein.	Conserved hypothetical protein.	0.501
ebA5361	hbcL1	ebA5361	ebA5368	Hypothetical protein.	4-hydroxybenzoate CoA ligase.	0.433
ebA5371	dctM-2	ebA5371	ebA5367	Hybrid sensor component of two-component regulation system.	DctM domain-containing protein; Conserved hypothetical protein,predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.	0.510

page 1 of 3

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About