STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rseAAnti sigma-E protein. (190 aa)    
Predicted Functional Partners:
rseB
Putative sigma factor regulatory protein.
 
 
 0.995
rpoE2
Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.973
degQ
Serine protease DegQ/MucD; Belongs to the peptidase S1C family.
  
 
 0.889
rpoE4
RNA polymerase sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.888
rpoE
RNA polymerase sigma factor (sigma24); Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.868
rpoE3
ECF-family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.868
rseC
Hypothetical protein, INTERPRO suggestion: probable positive regulator of sigma(E).
 
  
 0.838
sspB
Stringent starvation protein B.
    
 
 0.806
ebA1283
Putative HTRA-like serine protease; Belongs to the peptidase S1C family.
  
 
 0.722
mucD
Putative serine protease MucD; Belongs to the peptidase S1C family.
  
 
 0.722
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.