STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rseBPutative sigma factor regulatory protein. (325 aa)    
Predicted Functional Partners:
rseA
Anti sigma-E protein.
 
 
 0.995
rpoE2
Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.938
rseC
Hypothetical protein, INTERPRO suggestion: probable positive regulator of sigma(E).
 
  
 0.929
ebA2572
Hypothetical protein.
  
  
 0.784
degQ
Serine protease DegQ/MucD; Belongs to the peptidase S1C family.
  
  
 0.697
ebA5471
Conserved hypothetical protein.
       0.658
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.529
ebA1764
Conserved hypothetical protein.
  
     0.522
ebA6459
Generic methyl-transferase.
  
     0.495
ebA3951
Conserved hypothetical protein.
  
     0.456
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.