STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
int-17Integrase; Belongs to the 'phage' integrase family. (402 aa)    
Predicted Functional Partners:
ebD61
Putative transcriptional regulator,possibly phage-related.
 
  
 0.619
ebA210
Hypothetical protein.
 
     0.511
ebA1345
Conserved hypothetical protein.
 
  
 0.493
lepA
GTP-binding protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.493
ebA5533
Hypothetical protein, INTERPRO suggestion: Beta tubulin or Prophage regulatory protein.
  
  
 0.448
recO
DNA repair protein recO (Recombination protein O); Involved in DNA repair and RecF pathway recombination.
 
     0.448
ebA1348
Hypothetical protein.
 
     0.433
lepB
Signal peptidase I (SPase I) transmembrane protein; Belongs to the peptidase S26 family.
  
    0.406
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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