STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
idi1Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (177 aa)    
Predicted Functional Partners:
ispA
Polyprenyl synthetase (EC 2.5.1.10),gene: ISPA OR NE1160; Belongs to the FPP/GGPP synthase family.
 
 
 0.945
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
    
 0.931
pdeR
Phenol-degradation regulator.
  
    0.578
ebA5677
Putative transporter.
       0.527
menA
Predicted 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
    
 0.524
s5h
Putative salicylate 5-hydroxylase.
  
  
 0.515
abmA
2-aminobenzoyl-CoA monooxygenase/reductase (EC 1.14.13.40).
  
  
 0.497
ebA7001
Putative alpha amylase/trehalose synthase.
     
 0.452
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase.
   
  
 0.450
ebA3297
Putative aromatic monooxygenase.
   
  
 0.450
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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