STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompWOuter membrane protein OmpW. (225 aa)    
Predicted Functional Partners:
hemN-2
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.837
ccoO
Cytochrome oxidase, cytochrome c subunit.
 
    0.729
ccoO-2
Cytochrome-cbb3 oxidase, subunit II.
  
    0.693
ccoN
Cytochrome C oxidase subunit transmembrane protein (EC 1.9.3.1).
  
  
 0.609
ccoN-2
Cytochrome-cbb3 oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.609
ebA5813
Hypothetical protein.
       0.542
hemN
Oxygen-independent coprophorphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.524
ebA186
Iron-sulfur cluster-binding protein.
  
    0.524
ccoP
Cytochrome-cbb3 oxidase, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
    0.524
ebA5135
Putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein.
  
    0.524
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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