STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ebA5833Beta-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (262 aa)    
Predicted Functional Partners:
hmgL
3-hydroxymethylglutaryl-CoA or malyl-CoA lyase.
   
 
 0.917
kctB
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
  
 0.911
kctA
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
  
 
 0.905
acsA-3
Acetoacetyl-CoA synthetase.
    
  0.900
ebA4666
Putative acetoacetyl-CoA synthetase.
    
  0.900
ebA5760
CoA ligase (AMP forming), possibly acetoacetyl-CoA synthetase.
    
  0.900
ebA5671
Predicted MaoC-like (R)-specific enoyl-CoA hydratase.
 
 0.846
ebA5834
Conserved hypothetical protein.
 
 
   0.845
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
  
 
 0.694
ebA5831
Hypothetical protein.
       0.520
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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