STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA5879Similar to lipopolysaccharide biosynthesis RfbU-related protein. (390 aa)    
Predicted Functional Partners:
ebA5887
Probable NAD dependent epimerase/dehydratase, possibly involved in polysaccharide biosynthesis.
 
  
 0.937
ebA5884
Hypothetical protein.
 
     0.931
wzx
Probably involved in the export of O-antigen (flippase Wzx).
 
  
 0.904
wbjB
Similar to polysaccharide biosynthesis protein.
 
  
 0.862
ebA5880
Hypothetical protein.
       0.791
ebA5881
Predicted glycosyl transferase.
       0.773
ebA5890
Predicted UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.773
capG
Similar to Protein capG, involved in capsular polysaccharide (CPS) biosynthesis.
  
  
 0.758
ebA5875
Similar to galactoside O-acetyltransferase.
  
  
 0.751
ebD105
Fragment of putative epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.641
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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