STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA6073Conserved hypothetical protein. (204 aa)    
Predicted Functional Partners:
rpoE3
ECF-family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.608
ebA6074
Conserved hypothetical protein.
       0.584
trmA
tRNA (Uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).
 
     0.568
ebA6075
Predicted short chain dehydrogenase.
       0.561
ebA2115
Putative periplasmic component of ABC-type transport system.
 
    0.525
ebA6291
Conserved hypothetical protein.
 
     0.498
ebA4518
Hypothetical protein.
 
     0.497
ebA6153
Hypothetical protein.
 
     0.483
ebA6294
Conserved hypothetical protein.
 
     0.469
ebA6152
Conserved hypothetical protein.
  
     0.438
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.