STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ebA6149Putative TonB-dependent receptor. (703 aa)    
Predicted Functional Partners:
ebA6147
Conserved hypothetical protein.
 
     0.800
ebA6152
Conserved hypothetical protein.
 
 
 
 0.751
ebA4518
Hypothetical protein.
  
     0.648
ebA6153
Hypothetical protein.
 
     0.628
ebA1737
Putative TonB protein.
   
 
 0.564
ebA1839
Hypothetical protein, possibly TonB-like energy transducer.
   
 
 0.564
tonB
Predicted gram-negative bacterial tonB protein.
   
 
 0.564
ebA6143
Hypothetical protein.
       0.551
reg2
Regulatory protein, LysR-family.
  
     0.487
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.436
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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