Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA6152Conserved hypothetical protein. (399 aa)    
Predicted Functional Partners:
ebA6153
Hypothetical protein.
 
     0.952
ebA6149
Putative TonB-dependent receptor.
 
 
   0.842
hemR
Hemin receptor precursor, TonB-dependent outer membrane uptake protein.
  
 
 
 0.758
ebA1863
Hypothetical protein.
  
     0.656
ebA6575
Conserved hypothetical protein.
 
 
   0.624
ebA4246
Long-chain N-acyl amino acid synthase.
  
     0.605
ebA6147
Conserved hypothetical protein.
       0.596
ebA1050
Carboxy-terminal processing protease; Belongs to the peptidase S41A family.
  
 
 0.581
ebA1855
Hypothetical protein.
   
 
 0.574
ftsK
Cell division FtsK transmembrane protein.
   
 
 0.574
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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