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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbC-6PHA synthase subunit PhaC. (370 aa)    
Predicted Functional Partners:
phbB
Acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.967
ebA4434
Putative maoC-like dehydratase.
 
  
 0.946
adh-2
Short-chain dehydrogenase/reductase,possibly involved in polyhydroxybutyrate (PHB) synthesis; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.925
fadB
Alpha-subunit of fatty acid oxidation complex.
     
 0.908
ebB222
Hypothetical protein.
 
     0.810
ebA6211
Hypothetical protein.
       0.773
phbR
Predicted Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.725
rimL
Probable acetyltransferase.
       0.658
pta
Putative phosphate acetyltransferase (EC 2.3.1.8), gene: PTA OR RPA4567.
 
  
 0.529
ebA5834
Conserved hypothetical protein.
 
   
 0.487
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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