Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ebA6518Probable CoA ligase (AMP-forming). (550 aa)    
Predicted Functional Partners:
ebA5321
Probable acyl-CoA dehydrogenase.
 
 
 0.930
ebA6506
Acyl-CoA dehydrogenase.
 
 
 0.930
ebA3433
Putative AMP-binding enzyme.
  
  
 
0.901
ebA6516
Enoyl coenzyme A hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.788
fdhB
Formate dehydrogenase, NAD(P) reducing, beta subunit.
    
 
 0.674
tatD-2
Putative tatD deoxyribonuclease.
       0.656
ebA5705
CoA ligase, AMP generating (three fragments in different reading frames).
  
 0.642
ebA6519
Hypothetical protein putative lipoprotein.
       0.630
ebA6521
Phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein; Periplasmic component of probable ABC-type transport system involved in resistance to organic solvents.
     
 0.608
ebA6524
Possible ABC transport permease.
     
 0.604
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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