STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traF-2Similar to plasmid like sex pilus assembly protein traF. (281 aa)    
Predicted Functional Partners:
traN
Similar to plasmid-like mating pair stabilization protein precursor TraN.
 
   
 0.952
traH
Similar to plasmid like pilus assembly and synthesis protein precursor TraH.
 
     0.947
traG
Similar to plasmid-like sex pilus assembly and mating pair stabilization protein TraG.
 
     0.920
traU
Similar to plasmid-like sex pilus assembly and synthesis protein traU.
     0.917
trbC
Similar to plasmid-like sex pilus assembly and mating formation protein precursor trbC.
 
     0.898
traB
Plasmid-like sex pilus assembly protein TraB.
 
     0.893
traW
Similar to plasmid-like transfer protein traW.
 
     0.890
traE
Plasmid-like conjugative transfer protein TraE.
 
     0.888
traC
Similar to plasmid-like sex pilus assembly protein traC.
 
     0.887
traF
Similar to plasmid-like sex pilus assembly protein TraF.
 
     0.876
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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