Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
int-21Integrase or site-specific recombinase; Belongs to the 'phage' integrase family. (425 aa)    
Predicted Functional Partners:
int-23
Phage integrase; Belongs to the 'phage' integrase family.
  
     0.662
ebD61
Putative transcriptional regulator,possibly phage-related.
 
  
 0.572
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.515
ebA1345
Conserved hypothetical protein.
 
  
 0.481
ebA210
Hypothetical protein.
 
     0.468
trbL
Plasmid like TrbL protein, component of conjugation system.
  
     0.450
ebA1348
Hypothetical protein.
 
     0.405
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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