STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppCOligopeptide transport system permease protein. (476 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein oppB.
 
 0.999
oppA
Oligopeptide-binding protein oppA precursor.
 
 0.999
ebA5655
Putative peptide ABC transporter permease protein.
 
0.993
ebA5660
Probable ABC transporter substrate binding protein.
 
 0.989
ebA5654
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.981
ebA6466
ATPase component ABC-type dipeptide/oligopeptide/nickel transport system; Belongs to the ABC transporter superfamily.
 
 0.981
ebA5658
Putative peptide ABC transporter permease protein.
  
  
 
0.925
ebA6655
ATP-dependent DNA ligase.
       0.581
ebA6657
Hypothetical protein.
       0.581
fabI
Enoyl-[acyl-carrier-protein] reductase.
       0.552
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.