Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yhiHPutative ABC transporter ATP-binding protein yhiH. (972 aa)    
Predicted Functional Partners:
ebA6743
Conserved hypothetical protein,predicted secretion protein HlyD family.
 
  
 0.966
ebA6745
ABC transporter.
 
  
0.920
ebA2851
Conserved hypothetical protein.
  
  
 0.810
nosY
Probable transmembrane protein.
  
 
 0.742
ebA4029
Nitroreductase family protein.
  
  
 0.654
moeY
Hypothetical protein, possible molybdopterin biosynthesis protein MoeY.
  
  
 0.654
ebA6738
Transcriptional regulator, TetR family.
     
 0.611
atpC
F1-ATP synthase, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.558
atpD
F1-ATP synthase, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 
 0.543
nosR
NosR transcription regulator (N-terminal domain), contains 4Fe-4S cluster.
 
  
 0.530
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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