Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
istA-40Transposase. (277 aa)    
Predicted Functional Partners:
tnpF19
Probable transposase (fragment).
 
  
 0.863
tnpF
Transposase, fragment.
     
 0.714
ebA6775
Hypothetical protein, fragment of flavin-containing monoxygenase.
   
   0.501
istB-36
Transposition helper protein, fragment.
     
 0.498
istA-45
Transposase.
 
  
 0.424
istB-41
Transposase.
 
  
 0.424
tnp42A
Probable transposase, N-terminal half.
 
  
 0.424
istB-44
Probable transposase.
 
  
 0.424
istBp-2
Probable transposition helper protein, N-terminal fragment.
 
  
 0.424
rec2
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.421
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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