Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ebA6787Hypothetical protein. (420 aa)    
Predicted Functional Partners:
ebA5975
Probable binding-protein-dependent transport system protein.
 
   
 0.804
capC
Capsular polysaccharide biosynthesis protein.
 
     0.742
gumC
Exopolysaccharide biosynthesis protein.
 
     0.732
ebA1598
Hypothetical protein.
  
     0.628
gumB
Polysaccharide export protein.
 
     0.601
ebA6791
Hypothetical protein.
       0.590
ebD55
Fragment of hypothetical protein.
  
     0.542
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.539
gspJ
General secretion pathway protein J.
  
   
 0.507
gspH
General secretion protein H.
  
   
 0.471
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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